About

SCI-VCF is a multi-platform application that helps users analyse the variant call format in a guided GUI setting. Summarize, inspect, analyse, and design interactive visualisations of the genetic variants from VCFs with a mouse click.

Workflows

SCI-VCF has three major workflows:

• Summarize: Get variant statistics from a VCF file.
• Compare: Differentiate the variants in two VCF files.
• Interface: View, search, sort, inspect, and filter genetic variants in a VCF file.

An additional module to interface with CSV files is also available.

Major Features

• A standalone framework for VCF analysis.
• User-friendly GUI with intuitive design.
• Built for accommodating users irrespective of programming expertise.
• Interactive plots to enable detailed study.
• Filter genetic variants based on various parameters.
• Downloadable summaries for further examination.
• Keyword search in VCF and CSV formats.
• Elaborate customization features to extract publication-ready plots.
• Easy installation and deployment across multiple platforms.